Postdoctoral Associate - Cancer Bioinformatics, Biostatistics, and Multi-Omics

Baylor College of Medicine; Houston (TX); On-site; USD 57,000 - 70,000; Full time

Job summary

Baylor College of Medicine in Houston, TX, seeks a Postdoctoral Associate in Cancer Bioinformatics, Biostatistics, and Multi-Omics. Onsite work with strong R/Python skills and experience in multi-omics data analysis.

The role includes computational workflow development, data integration, and biomarker discovery in translational cancer research. The candidate will analyze bulk and single-cell omics, spatial data, and imaging modalities, using HPC resources and reproducible pipelines.

Qualifications

• MD or Ph.D. in Basic Science, Health Science, or a related field.
• Ph.D. in Bioinformatics, Computational Biology, Biostatistics, Statistics, Biomedical Informatics, Data Science, cancer biology, Genomics, Systems Biology, or related quantitative field.

Responsibilities

• Develops, implements, and maintains reproducible bioinformatics pipelines for large-scale cancer omics datasets.
• Analyzes bulk RNA-seq data, including QC, normalization, differential expression, and GSEA.
• Analyzes single-cell RNA-seq datasets including QC, clustering, cell-type annotation, and trajectory analysis.
• Performs computational analysis of spatial transcriptomics data and integrates with single-cell datasets.
• Analyzes proteomics/metabolomics datasets and integrates with transcriptomic data.
• Analyzes ATAC-seq and ChIP-seq data, including QC, peak identification, motif analysis, and TF activity.
• Analyzes imaging mass cytometry/CyTOF data for high-dimensional phenotyping and spatial analysis.
• Develops multi-omics integration methods and biomarker discovery workflows.
• Develops and applies ML/statistical models for biomarker discovery and patient stratification.
• Establishes standardized workflows, version control, and documentation.

Skills

R programming

Python programming

Biostatistics

Bioinformatics

Machine learning

Single-cell analysis

Education

MD or PhD in Basic/Health Sciences

PhD in Bioinformatics/Computational Biology/Statistics/Data Science

Tools

Linux/Unix

GraphPad Prism

Job description

Postdoctoral Associate – Cancer Bioinformatics, Biostatistics, and Multi-Omics

Division: Molecular and Cell Biology

Work Arrangement: Onsite only

Location: Houston, TX

Salary Range: $63,480

FLSA Status: Exempt

Work Schedule: Monday - Friday, 8 a.m. - 5 p.m.

Summary

Dr. Putluri’s laboratory at Baylor College of Medicine is seeking a highly motivated and talented Postdoctoral Fellow in Cancer Bioinformatics, Cancer biology, and Biostatistics to join our multidisciplinary cancer research team.

The Postdoctoral Associate will have strong, hands‑on expertise in R and Python and be highly proficient in using R for statistical analysis, bioinformatics, data visualization, and multi-omics data analysis. The candidate should be comfortable independently developing, executing, troubleshooting, and documenting computational workflows for large-scale biological datasets.

The Postdoctoral Associate will lead computational and statistical analyses of high-dimensional multi-omics and spatial datasets generated from cancer models and translational human specimens. The position will focus on developing and applying innovative computational approaches to understand molecular mechanisms of cancer progression, metabolic reprogramming, therapeutic resistance, and tumor-immune interactions.

The Postdoctoral Associate will work with diverse datasets that includes bulk RNA-seq, single-cell RNA-seq, proteomics, metabolomics, ATAC-seq, ChIP-seq, spatial transcriptomics, spatial proteomics, spatial metabolomics and imaging mass cytometry (CyTOF). A major emphasis will be placed on multi-omics data integration, statistical modeling, biomarker discovery, pathway/network analysis, and development of reproducible computational workflows.

This position provides an excellent opportunity to work at the interface of cancer biology, computational biology, bioinformatics, and biostatistics, with access to state‑of‑the‑art multi‑omics technologies, patient‑derived models, 3D cancer models, and clinically annotated human specimens.

The Postdoctoral Associate will work on cutting‑edge translational cancer research projects involving tumor cell signaling, metabolic reprogramming, immuno‑oncology, and therapeutic target identification. The lab focuses on understanding metabolic and molecular vulnerabilities driving cancer progression, therapeutic resistance, and tumor-immune interactions. This position offers opportunities to work with cutting‑edge cancer models, 3D culture systems, and translational human samples. This position offers the opportunity to work with state‑of‑the‑art platforms that includes patient‑derived models (PDXs), 3D organoids/spheroids, advanced molecular assays, and multi‑omics datasets.

Baylor College of Medicine typically follows similar to the NIH stipulated stipend guidelines for Postdoctoral Associates.

Job Duties

• Develops, implements, and maintains reproducible bioinformatics pipelines for large-scale cancer genomics, transcriptomics, proteomics, metabolomics, epigenomics, and spatial datasets.
• Analyzes bulk RNA-seq data, including quality control, normalization, differential expression, pathway enrichment, gene‑set enrichment analysis (GSEA), and molecular signature development.
• Analyzes single‑cell RNA‑seq datasets that includes quality control, dimensionality reduction, clustering, cell‑type annotation, differential expression, cell‑state analysis, trajectory analysis, and cell‑cell communication.
• Performs computational analysis of spatial transcriptomics data, including spatially variable features, spatial clustering, cell‑type deconvolution, spatial interactions, and integration with single‑cell datasets.
• Analyzes proteomics and metabolomics datasets, including data preprocessing, normalization, statistical testing, differential abundance analysis, pathway enrichment, network analysis, and integration with transcriptomic datasets.
• Analyzes ATAC‑seq and ChIP‑seq data, including quality control, peak identification, motif analysis, transcription‑factor activity, chromatin accessibility, and integration with gene‑expression data.
• Analyzes imaging mass cytometry/CyTOF datasets, including high‑dimensional cell phenotyping, clustering, spatial organization, cell‑cell interaction analysis, and statistical modeling.
• Develops computational approaches for multi‑omics integration to identify molecular pathways, regulatory networks, metabolic vulnerabilities, biomarkers, and therapeutic targets.
• Develops and applies machine learning and statistical modeling approaches for biomarker discovery, classification, prediction, and patient stratification.
• Develops algorithms and computational methods to address innovative questions in single‑cell, spatial, metabolic, and multi‑omics biology.
• Establishes standardized workflows for data quality control, reproducibility, version control, and computational documentation.
• Performs large‑scale data processing using high‑performance computing (HPC) and cloud‑based computational resources, when appropriate.
• Performs multivariable regression, survival analysis, longitudinal analysis, correlation analysis, clustering, dimensionality reduction, and predictive modeling.
• Conducts in‑vitro cancer biology experiments, including 2D culture, 3D organoids, spheroids, and patient‑derived models. Able to performs CRISPR/Cas9‑mediated gene knockout (KO), siRNA/shRNA‑mediated knockdown (KD), and validation of engineered cell lines and executes molecular and biochemical assays and functional phenotyping.
• Performs mouse studies using immune‑competent strains and immune‑compromised NSG mice, including tumor implantation, drug treatment, and immune profiling.
• Conducts luciferase labeling of cancer cells and use bioluminescence imaging to trace tumor growth and metastasis in vivo.
• Prepares manuscripts, figures, and grant‑related materials, and organize data for grant/paper submissions.
• Presents research findings at internal meetings and national/international conferences.
• Performs other job‑related duties as assigned.

Minimum Qualifications

• MD or Ph.D. in Basic Science, Health Science, or a related field.
• No experience required.

Preferred Qualifications

• Ph.D. in Bioinformatics, Computational Biology, Biostatistics, Statistics, Biomedical Informatics, Data Science, cancer biology, Genomics, Systems Biology, or a related quantitative field.
• Strong programming experience in R and/or Python.
• Demonstrated experience analyzing one or more high‑throughput datasets, such as RNA‑seq, single‑cell RNA‑seq, spatial transcriptomics, proteomics, metabolomics, ATAC‑seq, ChIP‑seq, or CyTOF/imaging mass cytometry.
• Experience with statistical analysis of large biological datasets and strong understanding of experimental design and statistical methodology.
• Experience with Linux/Unix environments, command‑line tools, and computational workflows.
• Experience with data visualization using R, Python, or related computational platforms.
• Ability to independently develop, troubleshoot, and document computational workflows.
• Strong ability to handle large datasets in Microsoft Excel and analyze data using GraphPad Prism, including statistics and data presentation.
• Proficiency in R or Python for biological data analysis.
• Ability to work independently and collaboratively in a fast‑paced research environment.
• Some experience working with 3D culture systems, including organoids or spheroids will plus.
• Some experience working with mouse models (xenograft, orthotopic, or PDX studies) will plus.
• Strong publication record and excellent communication skills.

Baylor College of Medicine is an Equal Opportunity/Affirmative Action/Equal Access Employer.

Baylor College of Medicine fosters diversity among its students, trainees, faculty, and staff as a prerequisite to accomplishing our institutional mission and setting standards for excellence in training healthcare providers and biomedical scientists, promoting scientific innovation, and providing patient‑centered care. Baylor College of Medicine is an Equal Opportunity/Affirmative Action/Equal Access Employer.