Machine Learning Scientist, BioML

Profluent Bio; Emeryville (CA); On-site; USD 200,000 - 330,000; Full time

Benefits offered by this job

Competitive compensation package with equity participation

401(k) with employer match

Comprehensive health benefits

Generous PTO

Job summary

Profluent Bio in Emeryville, CA, is seeking a Machine Learning Scientist to drive research in generative modeling and protein design. The role involves developing advanced models, training them with extensive biological data, and collaborating with interdisciplinary teams.

The ideal candidate should hold a PhD or equivalent experience in relevant fields, with a strong background in machine learning and a commitment to innovation in biomedicine.

This position offers competitive compensation, benefits, and a significant opportunity to impact the future of protein design.

Qualifications

• PhD or equivalent industry experience.
• Expertise in machine learning at the intersection with biology.
• Publications in major conferences or journals.

Responsibilities

• Design and develop predictive and generative models.
• Use protein and nucleic acid data to train models.
• Collaborate with machine learning and protein design teams.

Skills

Machine Learning techniques

Natural Language Processing

Deep Learning frameworks

Education

PhD in Computer Science or related field

Tools

Pytorch

Jax

Job description

Profluent is an AI-first protein design company. Founded in 2022, we develop deep generative models to design and validate novel, functional proteins to revolutionize biomedicine. Based in Emeryville, CA, we are backed by leading investors including Altimeter Capital, Bezos Expeditions, Spark Capital, Insight Partners, Air Street Capital, AIX Ventures, and Convergent Ventures, and have raised over $150M to date.

We're looking for a motivated and creative Machine Learning (ML) Scientist to drive research into models at the intersection of complex protein biology and AI. This position offers an opportunity to work at the forefront of generative modeling research across language processing, representation learning, and protein engineering. You should be a self-directed researcher who has the ability to rapidly prototype and evaluate new models and algorithms in the biomolecular domain.

As an early employee, you will proactively shape the direction of our machine learning efforts and collaborate across diverse teams of computational and experimental scientists.

Responsibilities

• Design and develop state-of-the‑art predictive and generative models incorporating domain‑specific evolutionary and experimental data
• Leverage massive‑scale protein and nucleic acid data to train specialized models for protein understanding and design
• Curate relevant datasets and design tasks for rigorous evaluation of generative models
• Collaborate across the machine learning and protein design teams to adapt and apply techniques for experimental validation
• Implement, analyze, and interpret multiple computational approaches and present results to colleagues in regular update meetings
• Work within a collaborative, fast‑paced, interdisciplinary team across biology and machine learning to help shape the scientific and strategic vision of the company

Qualifications

• PhD (or equivalent industry experience) in Computer Science, Machine Learning, Natural Language Processing, Applied Math, Computational Biology, Statistics, or a related field
• Experience with conceiving of, implementing, and evaluating novel machine learning techniques at the intersection with biology
• Publications at major machine learning conferences (NeurIPS, ICML, ICLR) or scientific journals (Nature, Science, Nature Biotech, Nature Methods, PNAS)
• Experience with modern deep learning frameworks such as Pytorch or Jax

Preferences

• Familiarity with foundational biology of proteins and nucleic acids
• Experience developing machine learning models for proteins (language models, structure prediction, design)
• Experience with cloud compute platforms (GCP, AWS, Azure, OCI)
• Previous experience in data extraction and curation from bioinformatics data sources
• Familiarity with wet lab experimental assays and associated limitations
• 3 to 5 years of industry experience

What We Offer

• High‑growth opportunity with meaningful impact on the future of protein design
• Competitive compensation package with equity participation
• 401(k) with a strong employer match
• Comprehensive benefits including health/dental/vision insurance
• Generous PTO policy and commitment to work‑life balance
• Professional development opportunities in a cutting‑edge field at the intersection of AI and biology

Profluent Bio, Inc is an equal opportunity employer promoting diversity and inclusion in the workspace. We do not discriminate on the basis of race, color, religion, marital status, age, national origin, ancestry, physical or mental disability, medical conditions, veteran status, sexual orientation, gender (including gender identity and gender expression), sex (which includes pregnancy, childbirth, and breastfeeding), genetic information, taking or requesting statutorily protected leave, or any other basis protected by law.

Employment Eligibility Verification

Legal authorization to work in the United States is required. In compliance with federal law, all persons hired must verify their identity and work eligibility and complete the required employment verification form upon hire.

Salary Range

$200,000 – $330,000 USD