Genomics Sr Staff Scientist

LE0010 Stanford Health Care; Palo Alto (CA); On-site; USD 190,541,000 - 252,558,000; Full time

Job summary

Stanford Health Care is seeking a Genomic Senior Staff Scientist to lead interpretation of variants from clinical sequencing data. You will draft clinical reports, collaborate with genetic counselors and clinicians, and support development of new genomic tests in a high‑quality CLIA‑certified environment.

The role requires an advanced degree in molecular biology/genetics with 4+ years in genetics or cancer genetics, including NGS experience.

Qualifications

• Requires PhD or MS in Molecular Biology, Genetics, or related field.
• Experience with next generation sequencing and variant interpretation in a clinical setting.
• Ability to evaluate scientific literature and clinical data for diagnostic reports.

Responsibilities

• Identify clinically significant sequence variants using established tools and workflows.
• Collect genetic, clinical, and molecular information from peer‑reviewed sources.
• Critically analyze published data relevant to clinical case analyses.
• Review patient medical records and abstract information for cases.
• Independently classify variants (germline and/or somatic) and summarize results.
• Meet turnaround times required for clinical laboratory reporting.
• Contribute to development of new clinical‑grade tests and SOPs.
• Create validation and SOP documentation drafts with minimal corrections.

Skills

NGS analysis

Variant interpretation

Literature review

Clinical reporting

Team collaboration

CAP/CLIA knowledge

Education

PhD or MS in Molecular Biology/Genetics

Job description

If you're ready to be part of our legacy of hope and innovation, we encourage you to take the first step and explore our current job openings. Your best is waiting to be discovered. Day - 08 Hour (United States of America) This is a Stanford Health Care job.

A Brief Overview

As a member of the Clinical Laboratory team, the Genomic Senior Staff Scientist will collaborate with a diverse team including laboratory directors, genetic counselors, laboratory technologists, bioinformaticians, and clinicians, who work together to provide clinical genetic and genomic test results. Within this team, the Genomic Senior Staff Scientist is responsible for variant prioritization and interpretation derived from clinical sequencing data, i.e. evaluating the clinical relevance of genetic variants identified by clinical diagnostic tests using appropriate internal and external guidelines, including relevant evidence obtained from the scientific literature. Additional responsibilities include, but are not limited to, drafting clinical reports, contributing to quality and process improvement or development projects, assisting in the design, development and evaluation of new clinical‑grade molecular diagnostic tests, evaluating and implementing evolving variant interpretation standards and workflows, and assisting in onboarding new team members.

Locations

Stanford Health Care

What you will do

• Identify clinically significant sequence variants (germline and/or somatic), using established tools and workflows
• Collect genetic, clinical, and molecular information from peer-reviewed scientific journals and public data sources
• Critically analyze and verify the accuracy of published data and abstract information relevant to individual clinical case analyses
• Review patient medical records and abstract information relevant to individual clinical case analyses
• Independently classify clinically significant sequence variants (germline and/or somatic)
• Summarize results of analyses and effectively communicate results in both written and verbal formats
• Meet interpretation turn-around times required in a clinical laboratory setting to provide prompt patient care.
• Demonstrate efficiency in daily tasks to complete assigned volume within the target turn‑around time.
• Proactively identify or volunteer to address production pressure points and take on projects to improve workplace productivity
• Participate in the development of new clinical‑grade genetic tests and/or enhancements of existing assays
• Assist in clinical validation of new tests and workflow updates
• Assist in the development or integration of new analysis systems, software tools, and workflows for new and existing laboratory tests
• Identify and report errors or inconsistencies in analysis tools or online resources
• Participate in software system verification and other quality improvement projects.
• Create verification documentation and SOP documentation drafts.
• Provide suggestions and feedback for SOP improvements of existing tests
• Lead the implementation of productivity enhancements
• Curate genes for new test development (Mendelian (germline) and/or oncology (somatic)
• Contribute to preparations for audits (documentation, quality monitoring, etc.) to meet CAP/CLIA requirements
• Create reference or training resource materials
• Consistently adhere to C‑I‑CARE standards in all interactions with team members and external collaborators.
• Collaborate to resolve misunderstandings and issues early before they impact timelines, team spirit or morale

Education Qualifications

• PhD or MS in Molecular Biology, Genetics, or a related discipline/field, from an accredited college or university.

Experience Qualifications

• Four (4) or more years of work experience in the field of genetics or cancer genetics, or combination of relevant experiences.
• One (1) year or more of work experience in a CLIA‑certified clinical laboratory performing diagnostic testing.
• Of the above, at least one (1) year experience must be with NGS‑based tests and at least one (1) year experience in germline or cancer diagnostic testing.

Required Knowledge, Skills and Abilities

• Experience in next generation sequencing and classification/curation of variants
• Ability to understand scientific literature and experimental procedures, as well as the limitations and applications of this information in a clinical setting.
• Experience in critically evaluating genetic data, research publications and online resources
• Experience in databases, tools, and resources commonly used in human or model organism genetics and genomics required (e.g. ClinVar/ClinGen, gnomAD, ExAC, HGMD, COSMIC)
• Experience working in multidisciplinary team‑based projects
• Ability to propose/identify and lead the implementation of significant productivity enhancements, particularly changes to decrease turnaround times and/or reduce costs
• Change management champion
• Detail‑orientation with strong analytical skills
• Computer skills, including word processing and spreadsheet applications
• Strong written and oral English communication skills
• Experience with databases, tools, and resources (e.g. ClinVar, gnomAD, ExAC, HGMD, COSMIC ) commonly used in human or model organism genetics and genomics required
• Experience in variant interpretation in a clinical genetic testing laboratory required
• Experience working both independently and on team‑based projects Perform day‑to‑day operations independently with little assistance from other team members or laboratory directors
• Participate in clinical validation of a new test or update to existing test with minimal supervision.
• Create validation documentation and SOP documentation drafts requiring minimal corrections

Preferred Knowledge, Skills and Abilities

• Knowledge to independently design and complete clinical validations, as well as oversee development and drafting of validation and SOP documentation.
• Excellent communication skills (oral and written), attention to detail, problem‑solving ability
• Clear understanding of CAP requirements

Licenses and Certifications

None

These principles apply to ALL employees: SHC Commitment to Providing an Exceptional Patient & Family Experience

Stanford Health Care sets a high standard for delivering value and an exceptional experience for our patients and families. Candidates for employment and existing employees must adopt and execute C‑I‑CARE standards for all of patients, families and towards each other. C‑I‑CARE is the foundation of Stanford’s patient‑experience and represents a framework for patient‑centered interactions. Simply put, we do what it takes to enable and empower patients and families to focus on health, healing and recovery. You will do this by executing against our three experience pillars, from the patient and family’s perspective: Know Me: Anticipate my needs and status to deliver effective care Show Me the Way: Guide and prompt my actions to arrive at better outcomes and better health Coordinate for Me: Own the complexity of my care through coordination Equal Opportunity Employer

Equal Opportunity Employer

Stanford Health Care (SHC) strongly values diversity and is committed to equal opportunity and non‑discrimination in all of its policies and practices, including the area of employment. Accordingly, SHC does not discriminate against any person on the basis of race, color, sex, sexual orientation or gender identity and/or expression, religion, age, national or ethnic origin, political beliefs, marital status, medical condition, genetic information, veteran status, or disability, or the perception of any of the above. People of all genders, members of all racial and ethnic groups, people with disabilities, and veterans are encouraged to apply. Qualified applicants with criminal convictions will be considered after an individualized assessment of the conviction and the job requirements.

Base Pay Scale: Generally starting at $66.52 - $88.14 per hour

The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to, internal equity, experience, education, specialty and training. This pay scale is not a promise of a particular wage. At Stanford Health Care, we seek to provide patients with the very best in diagnosis and treatment, with outstanding quality, compassion and coordination. With an unmatched track record of scientific discovery, technological innovation and translational medicine, Stanford Medicine physicians are pioneering leading edge therapies today that will change the way health care is delivered tomorrow. As part of our spirit of discovery, we also leverage our deep relationships with luminary Silicon Valley companies to develop new ways to deliver preeminent patient care. Learn about our awards and significant events.