Data Scientist - Innovation - PhD

Caris MPI, Inc.; Irving (TX); On-site; USD 150,000 - 190,000; Full time

Job summary

Caris Life Sciences in Irving, TX is seeking a Data Scientist for the Innovation Team to develop ML/DL models on molecular sequencing data (WGS, WES, RNA-seq, cfDNA) and to design analytic pipelines for biomarker discovery that can impact clinical decision-making.

You will lead end-to-end research projects, publish findings, and help shape methods for diagnostic platforms while collaborating with bioinformaticians, molecular biologists, and clinicians in a fast-moving R&D environment.

Qualifications

• PhD completed or up to ~2 years post-doctoral research experience.
• Demonstrated work on cancer biology or translational research problem.
• Hands-on experience with molecular sequencing data (WGS/WES/RNA-seq/cfDNA) and pipelines.
• Experience with generative AI applied to scientific/clinical data.
• Proficiency with PyTorch and modern DL architectures; ML/DL applications to biology/clinical data.

Responsibilities

• Process, manipulate, and analyze large MS datasets from NGS to develop cancer biomarkers.
• Develop novel algorithms for feature extraction and biomarker discovery from sequencing data.
• Apply first-principles analysis to translate open questions into tractable problems.
• Utilize state-of-the-art ML/DL methods for biological/clinical research questions.
• Create evaluation frameworks and track experiments with MLflow or Weights & Biases.
• Contribute to peer-reviewed publications and present findings at conferences.

Skills

Python

PyTorch

Linux

Git

Cloud AWS

Generative AI

Education

PhD in Data Science / Bioinformatics / Genomics

Tools

AWS (EC2/S3)

MLflow

Weights & Biases

Docker

Job description

At Caris, we understand that cancer is an ugly word—a word no one wants to hear, but one that connects us all. That’s why we’re not just transforming cancer care—we’re changing lives.We introduced precision medicine to the world and built an industry around the idea that every patient deserves answers as unique as their DNA. Backed by cutting-edge molecular science and AI, we ask ourselves every day: “What would I do if this patient were my mom?” That question drives everything we do.But our mission doesn’t stop with cancer. We're pushing the frontiers of medicine and leading a revolution in healthcare—driven by innovation, compassion, and purpose.Join us in our mission to improve the human condition across multiple diseases. If you're passionate about meaningful work and want to be part of something bigger than yourself, Caris is where your impact begins.Position SummaryWant to help build AI models for the next generation of cancer diagnostics? The models you build here have direct line-of-sight to translational research and clinical decision-making - work with the potential to shape how cancer is detected, profiled, and treated. As a Data Scientist on the Innovation Team, you will develop machine learning and deep learning algorithms on molecular sequencing data (WGS, WES, RNA-seq, cfDNA), design analytic pipelines for novel biomarker discovery, and tackle the most challenging problems in liquid biopsy and translational oncology research.About the TeamThe Innovation Team is a small, fast-moving R&D group within Caris Life Sciences, drawing on proprietary clinical research data that no other team in oncology can match. We work closely with bioinformaticians, molecular biologists, and clinical scientists to develop high-impact AI models with the potential to shift the landscape of clinical outcomes. You will have the freedom to lead research projects end-to-end - from problem framing to deployment - and to shape the methods that drive Caris' R&D agenda. In your first year, success looks like leading one or two research projects from problem framing through deployment, contributing to a peer-reviewed publication or conference submission, and helping shape methods that inform Caris' diagnostic platform.Job ResponsibilitiesProcessing, manipulating, and analyzing large diverse datasets generated from NGS to develop biomarkers for cancer diagnosis, prognosis, and treatment.Developing novel algorithms for feature extraction and biomarker discovery from molecular sequencing data.Applying first-principles analysis to translate open research questions into tractable, well-defined problems.Applying state-of-the-art machine learning and deep learning methods to biological and clinical research questions.Creating rigorous evaluation frameworks and tracking experiments systematically using tools such as MLflow or Weights & Biases.Authoring peer-reviewed research publications and presenting findings at scientific conferences.Required QualificationsPhD in Data Science, Bioinformatics, Computational Biology, Genomics, Statistics, Computer Science, Engineering, Biophysics, or a related quantitative or biological field.PhD recently completed, or up to approximately 2 years of post-doctoral research experience (academic or industry).Demonstrated work on a cancer biology or translational research problem (PhD thesis chapter, peer-reviewed publication, or postdoc / industry role).Hands-on experience with molecular sequencing data (e.g., WGS, WES, RNA-seq, cfDNA) including production-grade pipelines and analysis.Hands-on experience with generative AI - large language models, foundation models (e.g., genomic or protein language models), or agentic workflows applied to scientific or clinical data.Proficiency with PyTorch and modern deep learning architectures (transformers, attention mechanisms), with demonstrated application of ML/DL to biological or clinical data.First-author or co-first-author peer-reviewed publications in machine learning venues (e.g., NeurIPS, ICML, ICLR) or in bioinformatics / computational biology journals.Strong Python; comfortable in Linux; proficient with git and collaborative workflows.Preferred QualificationsMulti-omics integration experience (genomics, transcriptomics, proteomics, methylation, etc.).Experience with epigenetics - DNA methylation analysis, chromatin biology, or related.Interest in cell-free DNA, liquid biopsy, and next-generation early cancer diagnostics.Interest in novel algorithm development for biomedical signal extraction in sequencing data.Proficiency in cloud platforms (AWS EC2, S3, HealthOmics) and containerization (Docker).Physical DemandsThis role primarily involves sedentary work at a computer workstation, including extended periods of typing, reading screens, and virtual or in-person collaboration. Caris provides reasonable accommodations to qualified individuals with disabilities; candidates who need accommodation during the application or interview process are encouraged to contact Caris HR.TrainingAll job-specific, safety, and compliance training are assigned based on the job functions associated with this employee.OtherThis position is on-site in Irving, TX. The team operates on a fast-iteration research cycle that benefits from close, in-person collaboration.Relocation assistance may be available for qualified candidates.Conditions of Employment: Individual must successfully complete pre-employment process, which includes criminal background check, drug screening, credit check ( applicable for certain positions) and reference verification.This job description reflects management’s assignment of essential functions. Nothing in this job description restricts management’s right to assign or reassign duties and responsibilities to this job at any time.Caris Life Sciences is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, religion, color, national origin, gender, gender identity, sexual orientation, age, status as a protected veteran, among other things, or status as a qualified individual with disability.