Computational Biologist 1

UNAVAILABLE; Portland (OR); On-site; USD 90,000 - 130,000; Full time

Benefits offered by this job

Medical, dental and vision coverage

208 hours PTO per year

Retirement plans

Tuition reimbursement

Commuter subsidies

Job summary

OHSU Knight Cancer Institute in Portland, OR invites applications for a Computational Biologist, Level 1, to study leukemia initiation and drug resistance using single-cell multi-omics. You will support the Agarwal Lab with data preparation, analysis and presentation, and will oversee your own project in a collaborative, translational environment.

The ideal candidate has a strong background in computational biology with experience in omics data analysis, pipelines, and HPC, and excellent

Qualifications

• Master's or Bachelor's in Computational Biology or related field with relevant experience.
• Experience analyzing genomic, transcriptomic, proteomic data for biomarker discovery.
• Experience implementing statistical methods for data treatment and QC.
• Experience developing reproducible, scalable analytics pipelines.
• Proficiency in R or Python; comfort with HPC environments.

Responsibilities

• Support Agarwal Lab research by data preparation, analysis and presentation.
• Manage independent project(s) within an interdisciplinary, translational setting.
• Collaborate with biology and computational analysts to advance leukemia single-cell studies.

Skills

R

Python

Omics data analysis

Statistics

Data pipelines

HPC workflows

Project management

Education

Master's Degree in Computational Biology

Bachelor's Degree in Computational Biology + 3 years experience

Tools

None

Job description

Department Overview

The primary mission of the Division of Oncological Sciences at OHSU's Knight Cancer Institute is to better understand cancer through basic, translational and population-based research that improves cancer prevention, detection and treatments for all. Our community of faculty, trainees and staff brings together scientists from a broad range of disciplines and works collaboratively to advance innovation and translate discoveries from the lab into meaningful impacts for cancer patients and our community.. Knight affiliates subscribe to three guiding principles: we are bold, we are supportive, and we work as a connected team in our fight to end cancer as we know it. We’d love for you to join us!

Every Knight Cancer employee is expected to embody our guiding principles:

• We act BOLDLY—Breakthroughs require pushing the boundaries of science, exploring new frontiers, and thinking differently
• We SUPPORT each other—Respect leads to trust, which leads to excellence
• We work as a CONNECTED team—We must leverage our collective brain power to conquer cancer because no one individual can do it alone

Function/Duties of Position

An exciting opportunity has been created for a Computational Biologist, Level 1 to join the Anupriya Agarwal Laboratory at the OHSU Knight Cancer Institute, Portland, OR to study the mechanisms of leukemia initiation and drug resistance using single-cell multi-omics approaches.

Dr. Agarwal and her team for over past 20 years focusing on identifying novel signaling pathways that are requisite for leukemia initiation, clonal evolution, and drug resistance. The new team member will help lead the project focused on understanding the mechanisms of leukemia initiation and drug resistance in a context dependent manner. Applicants will need to possess strong technical and organizational skills as well as the ability to manage an independent project.

The position is in an interdisciplinary, collaborative, and highly translational environment in the OHSU Knight Cancer Institute. As a Computational Biologist, Level 1, you will be focusing on advancing early cancer detection and drug resistance. The work will concentrate on the discovery of new therapeutic targets in leukemia using single cell approaches. You will work with mentors who have experience in both biology and computational analysis aspects. You will support Agarwal Lab research by data preparation, analysis, and presentation. You would be assigned your own project(s). You will have a detailed knowledge of all aspects of data analysis, and you will be comfortable working both individually and in highly collaborative teams. You will possess good organizational and interpersonal skills.

Required Qualifications

• Master's Degree in Computational Biology or related field OR Bachelor's Degree in Computational Biology or related field AND 3 years of relevant experience
• Experience with analysis of ‘omic data (genomic, transcriptomic, proteomic etc.), particularly for target or biomarker discovery
• Experience in implementing statistical methods as appropriate for dataset treatment (e.g. quality inspection, normalization, differential feature detection, etc.)
• Experience in developing pipelines to support analytics as described to additionally facilitate improved data management, and to generate complete workflows that are reproducible and scalable
• High-level competency in an appropriate programming language (R or Python ideally)
• An understanding of a variety of sophisticated statistical methods for data treatment
• Usage of structured engineering methods for specifying, designing, and implementing systems and pipelines in high performance computing environments
• Ability to prioritize multiple tasks at one time

Preferred Qualifications

• Relevant coursework
• Single-cell analysis
• PhD’s Degree in Computational Biology, Bioinformatics or related field
• Experience with or knowledge regarding proteomics data (e.g. from mass spectrometry) would be a bonus but is NOT required and should not be a deterrence from applying
• Experience with machine learning a bonus but not required
• A passion for open-access innovation

Additional Details

We offer a variety of benefits on top of joining a thriving organization:

• Medical, dental and vision coverage at no or low cost to employees
  • Covered 100% for full-time employees and 88% for dependents
• Several retirement plans to choose from with contributions from OHSU
• 208 hours of PTO per year
• 8 days of sick time off
• 9 paid holidays per year
• Commuter subsidies
• Tuition reimbursement
• Access to group life insurance, disability insurance and other supplemental benefits
• Annual Merit Increase
• Growth/Development Opportunities
• Employee discounts to local and major businesses

#linkedin #indeed #knightcancerjobs#knightresearchandlabjobs#knightcompbiojobs #knightinternal

Why apply to OHSU?

We are Oregon's only public academic health center. In addition to caring for patients, we lead groundbreaking research. We also train the next generation of health care professionals. As Portland's largest employer, we give you opportunities to learn and advance in a system of hospitals and clinics across Oregon and Southwest Washington.All are welcome. OHSU welcomes people of all ages, ethnicities, genders, national origins, religions and sexual orientations. We are striving to build an anti-racist, multicultural institution and encourage people with diverse backgrounds to apply. To request reasonable accommodation, contact [e-mail]