Bioinformatics Scientist

Axle; Bethesda (MD); On-site; USD 120,000 - 130,000; Full time

Benefits offered by this job

Paid Time Off and Paid Holidays

401K match up to 5%

Educational Benefits for Career Growth

Employee Referral Bonus

Flexible Spending Accounts

Healthcare (FSA)

Parking Reimbursement Account (PRK)

Dependent Care Assistant Program (DCAP

Transportation Reimbursement Account (

Job summary

Axle is seeking a highly ambitious Bioinformatics Scientist to join our NIH-based team in Bethesda, MD. The role focuses on bioinformatics, statistical design for high-throughput genome-scale data, and development of scalable pipelines to support NIAID DIR/RTB initiatives.

The candidate will contribute to somatic/germline variant analyses, single-cell and bulk expression work, and cross-institutional data dissemination. Strong scripting, cloud, and documentation skills are essential.

Qualifications

• 4+ years in bioinformatics with production pipelines.
• Expertise in Python or R and at least one other language.
• Experience with HPC/cloud and workflow frameworks.

Responsibilities

• Address bioinformatics needs and design experiments for DIR/NIAID.
• Develop high-throughput data analysis pipelines and workflows.
• Support somatic/germline variant calling and RNA-seq analyses.
• Publish results and contribute to scientific publications.
• Collaborate with RTB and external institutes on data dissemination.

Skills

Python

R

C/C++

Shell scripting

Bioinformatics

Data analysis

NGS analysis

Cloud computing

Education

Bachelor’s degree in related field

Master’s or Ph.D. preferred

Tools

Docker

Snakemake

Nextflow

CWL/WDL

AWS/GCP/Azure

Git

Job description

Axle is a bioscience and information technology company that offers advancements in translational research, biomedical informatics, and data science applications to research centers and healthcare organizations nationally and abroad. With experts in biomedical science, software engineering, and program management, we focus on developing and applying research tools and techniques to empower decision-making and accelerate research discoveries. We work with some of the top research organizations and facilities in the country including multiple institutes at the National Institutes of Health (NIH).

Benefits We Offer

• Paid Time Off and Paid Holidays
• 401K match up to 5%
• Educational Benefits for Career Growth
• Employee Referral Bonus
• Flexible Spending Accounts
  • Healthcare (FSA)
  • Parking Reimbursement Account (PRK)
  • Dependent Care Assistant Program (DCAP)
  • Transportation Reimbursement Account (TRN)

Axle is seeking a highly ambitious, adaptable, structured, and detail-oriented Bioinformatics Scientist to join our vibrant team at the National Institutes of Health (NIH), National Institute of Allergy and Infectious Diseases (NIAID), Division of Intramural Research (DIR), Research Technologies Branch (RTB), Integrated Data Sciences Section (IDSS) in Bethesda, MD.

Responsibilities

Address bioinformatics, scientific computing, and data analysis needs of users within the Division of Intramural Research (DIR) at NIAID and their collaborators by lending expertise in the proper statistical design of biological experiments involving high-throughput genome-scale technologies, data mining and knowledge discovery techniques, automated workflow development, statistical and scientific experimental design consulting.

Provide bioinformatics support to include somatic and germline variant calling and analysis, single-cell and bulk gene expression analysis, de novo assembly of genomes and transcriptomes, comparative genomics of model and non-model organisms, proteomics, ChIP-seq, ATAC-seq, and the development of high-throughput pipelines for the analysis of the above data modalities.

Provide programming and troubleshooting support to the Research Technologies Branch (RTB) of the National Institute of Allergy and Infectious Diseases (NIAID) and collaborating Institutes in the dissemination of research data.

Perform computational data analysis on genomic and clinical research data.

Work with staff on scientific programming and experimental design. Provide statistical support/analysis on research data.

Contribute to and co-author scientific publications in leading peer-reviewed journals.

Contribute to the development of a scalable and flexible resource to provide NGS bioinformatics, structural biological and computational, machine learning data support to NIAID scientists and investigators.

It is expected that the bioinformatics scientist will need strong skills in the following:

NGS analysis (whole-exome, whole-genome, RNA-seq, ChIP-Seq, both long- and short-read technologies, etc.)

Statistical modeling

Scripting

Biological interpretation

Specific Qualifications

Ability to obtain and maintain a Public Trust Security clearance

Minimum Bachelor’s degree in related field, Master’s or Ph.D. preferred

4+ years of experience in bioinformatics

2+ years of experience developing and maintaining production bioinformatics pipelines

Expert in two (2) of the following languages: Python, R, C/C++, sh/bash

Experience building images using one (1) of the following: Docker, Podman, Singularity/Apptainer

Expert in one (1) pipeline framework: Snakemake, Nextflow, CWL/WDL

Expertise building technical and user documentation for tools, pipelines, and applications

Experience building pipelines locally on-premise using available HPC infrastructure

Experience building pipelines/applications in the Cloud with AWS/GCP/Azure is a plus

Experience building applications using one (1) of the following frameworks is a plus: Django, Flask, RShiny, Electron, Flutter, React

Experience working in a laboratory setting is a plus but not required

Disclaimer

The above description is meant to illustrate the general nature of work and level of effort being performed by individuals assigned to this position or job description. This is not restricted as a complete list of all skills, responsibilities, duties, and/or assignments required. Individuals may be required to perform duties outside of their position, job description or responsibilities as needed.

The diversity of Axle’s employees is a tremendous asset. We are firmly committed to providing equal opportunity in all aspects of employment and will not tolerate any illegal discrimination or harassment based on age, race, gender, religion, national origin, disability, marital status, covered veteran status, sexual orientation, status with respect to public assistance, and other characteristics protected under state, federal, or local law and to deter those who aid, abet, or induce discrimination or coerce others to discriminate.

Accessibility: If you need an accommodation as part of the employment process please contact: [e-mail]

This role has a market-competitive salary with an anticipated base compensation range listed below. Actual salaries will vary depending on a candidate’s experience, qualifications, skills, and location.

#IND

Salary Range: $120,000 USD - $130,000 USD