Associate Director, App

Lila Sciences; Cambridge, San Francisco (MA, CA); On-site; USD 204,000 - 306,000; Full time

Benefits offered by this job

Bonus potential

Equity

Comprehensive benefits

Job summary

Lila Sciences in Cambridge, MA is seeking an Associate Director of Engineering for the Application Team to lead engineers who design the agents, interfaces, and platform integrations that let researchers seamlessly collaborate with AI.

You will build a team of 8-10 engineers across full-stack, agent, and platform specialties, set the technical roadmap, own end-to-end product delivery, and collaborate with ML researchers, scientists, and product leaders to translate workflows into capabilities.

Qualifications

• Bachelor's or Master's degree in Computer Science, Engineering, or related field.
• 12+ years of engineering experience building and deploying large-scale production systems, with 5+ years leading senior engineers.
• Deep technical judgment on Applied AI (agents, MCP, context engineering) and across the full stack (React, TypeScript, Python, FastAPI, SQL/NoSQL, AWS, Kubernetes).
• Hands-on experience using AI coding assistants and agentic tooling to drive productivity.
• Proven ability to define technical strategy, drive it to execution, and balance trade-offs between scalability, performance, delivery speed, and maintainability.
• Acute listening skills and cross-functional collaboration with scientists, ML engineers, product, and design.

Responsibilities

• Build, mentor, and manage a high-performing team of 8-10 engineers spanning full-stack, agent, and platform expertise.
• Define and execute the technical roadmap for LILA's application layer aligning with broader AI and product strategy.
• Own end-to-end delivery of the application platform — chat, agents, artifacts, and the integrations to lab workflows and ML pipelines.
• Partner with ML researchers, scientists, product managers, and other engineering leaders to translate scientific workflows into product capabilities.
• Represent LILA's applied-AI work externally through conferences and writing.

Job description

Cambridge, MA USA; San Francisco, CA USA

Scientists shouldn't have to context-switch between a dozen tools to go from hypothesis to result. We're building the platform that makes this a reality — and we need engineering leaders who want to build the team that solves problems no one has solved before.

We're hiring an Associate Director of Engineering, Application Team to lead the engineers designing the agents, interfaces, and platform integrations that let researchers seamlessly collaborate with AI.

About The Team

The Application Team sits at the center of LILA — the integration point where Machine Learning, Life Sciences, Physical Sciences, and Software become one AI-native experience that carries a scientist from hypothesis to experiment to breakthrough results.

• AI isn't a feature here — it's the architecture. Agent frameworks, tools, and LLM orchestration are core primitives, not bolt-ons.
• The problems are genuinely hard. Connecting AI to automated lab workflows, ML pipelines, and multi-domain knowledge graphs means inventing patterns, not copying them.
• You'll lead engineers who learn domains they never expected. Working shoulder-to-shoulder with lab scientists and ML engineers means your team's technical surface area grows fast.
• Your team ships things that matter. The tools they build accelerate research timelines from months to days.

If you want to lead at the intersection of AI and science, move fast, and grow the kind of team that can architect systems that don't exist yet — we want to talk.

What You'll Be Building

• Team Leadership: Build, mentor, and manage a high-performing team of 8-10 engineers spanning full-stack, agent, and platform expertise. Foster a culture of collaboration, ownership, and continuous improvement; conduct performance reviews, provide feedback, and identify opportunities for growth. Manage team workload, prioritize projects, and ensure timely delivery of high-quality solutions.
• Technical Strategy & Execution: Define and execute the technical roadmap for LILA's application layer aligning with LILA's broader AI and product strategy. Drive innovation in how scientists interact with AI-driven systems.
• Product Delivery: Own end-to-end delivery of the application platform — chat, agents, artifacts, and the integrations connecting them to lab workflows and ML pipelines — ensuring reliability, performance, and security across everything the team ships.
• Cross-Functional Collaboration: Partner with ML researchers, scientists, product managers, and other engineering leaders to understand scientific workflows and translate them into product capabilities. Communicate technical concepts effectively to both technical and non-technical audiences; manage expectations and ensure alignment across teams.
• Engineering Thought Leadership: Represent LILA's applied-AI work externally through conferences, presentations, and writing — helping attract top talent and establishing LILA's leadership at the intersection of AI and science.

What You'll Need To Succeed

• Bachelor's or Master's degree in Computer Science, Engineering, or related field.
• 12+ years of engineering experience building and deploying large-scale production systems, with 5+ years leading senior engineers.
• Track record of building and growing high-performing engineering teams in high-growth or early-stage environments where speed-to-value mattered as much as long-term architecture.
• Deep technical judgment on Applied AI (agents, MCP, context engineering) and across the full stack (React, TypeScript, Python, FastAPI, SQL/NoSQL, AWS, Kubernetes).
• Hands-on experience — personally and on the teams you've led — using AI coding assistants and agentic tooling to drive productivity.
• Proven ability to define technical strategy, drive it to execution, and balance trade-offs between scalability, performance, delivery speed, and maintainability.
• Acute listening skills and a proven track record of partnering cross-functionally with scientists, ML engineers, product, and design; able to explain complex ideas to diverse audiences.

Bonus Points For

• Applied AI Engineering leadership: Experience shipping products built on AI agents, graph-based workflows, tool-use protocols (MCP), RAG pipelines, or LLM orchestration frameworks.
• AI-native product intuition: A point of view on what "good" looks like for chat, agent, and copilot experiences — and how to evolve it as the underlying models improve.
• Cloud & DevOps depth: Familiarity with AWS, Kubernetes, infrastructure-as-code (Terraform, CloudFormation), and CI/CD (GitHub Actions).
• Thought leadership in the applied-AI community via conference talks, blog posts, or open source.
• Scientific domain exposure: Experience with laboratory software, analytics for life sciences or material sciences, or adjacent scientific computing domains.

Compensation

We offer competitive base compensation with bonus potential and generous early-stage equity. Your final offer will reflect your background, expertise, and expected impact.

U.S. Benefits.

Full-time U.S. employees receive a comprehensive benefits program including medical, dental, and vision coverage; employer-paid life and disability insurance; flexible time off with generous company wide holidays; paid parental leave; an educational assistance program; commuter benefits, including bike share memberships for office based employees; and a company subsidized lunch program.

International Benefits.

Full-time employees outside the U.S. receive a comprehensive benefits program tailored to their region. USD salary ranges apply only to U.S.-based positions; international salaries are set to local market.

Expected Base Salary Range

$204,000 - $306,000 USD

About LILA

Lila Sciences is building Scientific Superintelligence™ to solve humankind's greatest challenges. We believe science is the most inspiring frontier for AI. Rather than hard-coding expert knowledge into tools, LILA builds systems that can learn for themselves.

LILA combines advanced AI models with proprietary AI Science Factory™ instruments into an operating system for science that executes the entire scientific method autonomously, accelerating discovery at unprecedented speed, scale, and impact across medicine, materials, and energy. Learn more at www.lila.ai.

Guided by our core values of truth, trust, curiosity, grit, and velocity, we move with startup speed while tackling problems of historic importance. If this sounds like an environment you'd love to work in, even if you don't meet every qualification listed above, we encourage you to apply.

Lila Sciences iscommitted to equal employment opportunityregardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, citizenship, marital status, disability, gender identity or Veteran status.

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