Assistant/Associate/Full Project Scientist - Machine Learning & Data Analytics - Advanced Bioimaging Center - Department of Molecular and Cell Biology

University of California-Berkeley; Berkeley (CA); On-site; USD 182,000 - 230,000; Full time

Benefits offered by this job

Full benefits

Job summary

University of California, Berkeley seeks two Project Scientists at Assistant/Associate/Full rank to advance machine learning and data analytics for terabyte- to petabyte-scale imaging projects. You will join a collaborative team reporting to PIs, contributing software tools and ML methods across biology and AI.

The role emphasizes open-source dissemination, cross-disciplinary collaboration, and rapid progress in imaging technology.

Qualifications

• PhD or equivalent international degree required.
• Minimum of four years of postdoctoral research experience.
• For Associate rank: minimum of 8 years of post-PhD research experience.
• For full rank: minimum of 14 years of post-PhD research experience.

Responsibilities

• Develop data analytics software for terabyte- to petabyte-scale imaging projects.
• Develop machine learning applications and manage projects with regular progress reports to PIs.
• Contribute to dissemination via open source code repositories, demonstrations, publications, and presentations.

Skills

C++

LabVIEW

MATLAB

Python

PyTorch

JAX

TensorFlow

CUDA

SLURM

LSF

AWS

GCP

Azure

Data governance

Mentoring

Education

PhD (or equivalent international degree)

PhD or equivalent international degree in Computation Data, Computer Sciences, Bioinformatics or Related field

Tools

Open source repositories

Job description

Position overview

Position title: Project Scientist

Salary range: The UC academic salary scales set the minimum pay determined by rank and step at appointment. See the following table for the current salary scale for this position: https://www.ucop.edu/academic-personnel-programs/_files/2025-26/represented-july-2025-scales/t37-b.pdf. A reasonable estimate for this position is $181,700 - $229,700.

Percent time: 100%

Anticipated start: Winter/Spring 2026

Position duration: Initial appointment is for one year with the possibility of renewal based on performance and funding availability.

Application Window

Open date: February 25, 2026

Next review date: Tuesday, Sep 15, 2026 at 11:59pm (Pacific Time)

Final date: Wednesday, Sep 30, 2026 at 11:59pm (Pacific Time)

Position description

The Advanced BioImaging Center (ABC) in the Department of Molecular and Cell Biology at the University of California, Berkeley seeks applications for two Project Scientists at the Assistant, Associate, or full rank. The selected candidate will be appointed at the rank to commensurate with prior experience. The position will report to Professor Gokul Upadhyayula, with Professor Eric Betzig serving as an additional academic mentor. The project scientist will make significant and creative contributions in the area of machine learning & data analytics.

The Advanced BioImaging Center (ABC) at UC Berkeley aspires to be a world-leading multidisciplinary imaging center that drives important biological discoveries through critical new advances in all aspects of imaging technology and that drives the dissemination of that technology through a multi-pronged education strategy to scientists around the world. ABC was intentionally designed to maximize scientific productivity and impact by adopting groundbreaking imaging technologies such as the next-generation adaptive optical multifunctional microscope, incorporating the high-level technical expertise of instrumentation scientists, applied mathematicians, and computational scientists, and building worldwide collaborations aimed at tackling the challenges posed by terabyte and petabyte-scale imaging data processing, visualization, and dissemination. Members of the ABC have access to leading-edge imaging and computing hardware, as well as exposure to collaborators from a range of diverse disciplines, including in the fields of Artificial Intelligence, Data Science, Mathematics, and more.

The Assistant/Associate/Full Project Scientists will be an integral part of a visionary scientific team driving cutting-edge biological discoveries through immediate applications of critical advances in imaging technologies. These positions will work with a dedicated team to develop data analytics software in terabyte- to petabyte-scale imaging projects. The incumbents will develop and refine machine learning applications and manage projects and provide regular progress reports to PIs and collaborators.

Successful candidates will be an integral part of the expert team working together with computational scientists and biologists in experimental design to tackle complex biological questions in a quantitative manner. The work will primarily be conducted at the facility in Barker Hall. Occasional travel may be required.

Key Responsibilities

• Make significant and creative contributions to development of new imaging and data processing tools for datasets generated on multicellular tissues, organoids, transparent embryos.
• Design, build, and maintain new software packages for efficient data processing.
• Advise on applications of these tools for biological imaging; collaborate with Postdocs and graduate students on specific projects to test, learn and implement for general and specific use cases.
• General organization and management of software documentation.
• Bring cross disciplinary expertise to solve problems at the intersection between life science, computer vision, and state-of-the-art AI methods.
• Work with petabyte-scale light sheet datasets that are typically 4D or 5D (x,y,z,t,chemistry). Identify and implement scalable solutions to scientific questions on large-scale data sets, especially using performant algorithms.
• Develop machine learning approaches, computer vision tools to help pre-process dataset and annotations to generate groundtruth benchmarks.
• Contribute to dissemination via open source code repositories, demonstrations, publications, presentation.

These positions will be eligible for full benefits.

Lab

https://abc.berkeley.edu/

Contract

https://uaw5810.org/ar-contract-2022/

Qualifications

Basic qualifications (required at time of application)

• PhD (or equivalent international degree)

Additional qualifications (required at time of start)

• Minimum of four years of postdoctoral research experience
• For consideration for the Associate Project Scientist rank: a minimum of 8 years of post PhD research experience
• For consideration for the full Project Scientist rank: a minimum of 14 years of post PhD research experience

Preferred qualifications

• PhD or equivalent international degree in Computation Data, Computer Sciences, Bioinformatics or Related field
• Demonstrated record of productivity and publications and/or scholarly contributions
• Strong biological background and understanding of molecular biology
• Demonstrate understanding of optical microscopy, including light sheet microscopy, adaptive optics, and modern scientific cameras
• Demonstrated ability to work in a research team, manage active collaborations with other academic groups
• Demonstrated experience handling and processing large scale imaging datasets (>100TB to petabyte scale and beyond)
• Expertise in programming in C++, Labview, MATLAB, Python
• Expertise in databases, data infrastructure, data governance
• Expertise in high performance computing using SLURM or LSF
• Experience with PyTorch, JAX, or Tensorflow
• Experience with NVIDIA CUDA and related OpenMP programming
• Experience with cloud services (AWS, GCP, Azure, etc)
• Experience with state of the art AI/ML architectures (vison transformers, diffusion models, etc
• Experience mentoring undergraduate/graduate students, and/or technicians.
• Experience with professional speaking engagements
• Ability to effectively communicate, participate in efficient and open collaboration, and engage with a diverse group of researchers
• The ideal candidate will be innovative and able to synergize various ideas and approaches, while exercising sound judgment to evaluate and take acceptable risks

Application Requirements

Document requirements

• Curriculum Vitae - Your most recently updated C.V.
• Cover Letter
• Statement of Research - Provide a summary of your major research accomplishments in approximately 250 words. Additionally, please include a brief statement highlighting your experience that is directly relevant to the key responsibilities of this position
• Project Portfolio - Summary portfolio of data and/or AI projects executed, as demonstrated by publications or github contributions

Reference requirements

• 3 required (contact information only)

Help contact

[e-mail]

About UC Berkeley

UC Berkeley is committed to diversity, equity, inclusion, and belonging in our public mission of research, teaching, and service, consistent with UC Regents Policy 4400 and University of California Academic Personnel policy (APM 210 1-d). These values are embedded in our Principles of Community, which reflect our passion for critical inquiry, debate, discovery and innovation, and our deep commitment to contributing to a better world. Every member of the UC Berkeley community has a role in sustaining a safe, caring and humane environment in which these values can thrive.

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• “Misconduct” means any violation of the policies or laws governing conduct at the applicant's previous place of employment, including, but not limited to, violations of policies or laws prohibiting sexual harassment, sexual assault, or other forms of harassment or discrimination, as defined by the employer.
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Job location

Berkeley, CA