Advisor – Process Engineer. Lilly Medicine Foundry

100 Eli Lilly and Company; United States; On-site; USD 129,000 - 189,000; Full time

Job summary

Lilly is seeking an Advisor – Process Engineer to serve as a senior technical authority in the Medicine Foundry. You will guide the design, scale-up, and manufacturing support for small molecule APIs, spanning from development through pilot plant stages.

You will develop plant-wide process models, mentor engineers, and ensure compliance with cGMP, safety, and regulatory requirements, while collaborating with HSE, QA, and Operations.

Qualifications

• PhD in Chemical Engineering, Chemistry, Pharmaceutical Sciences or related.
• BS/MS with 10+ years in pharma/biotech process engineering.

Responsibilities

• Serve as technical authority for equipment design and scale-up across small molecule node.
• Lead detailed engineering calculations, heat/mass transfer modeling, and equipment sizing for production suites.
• Drive scale-up from lab to pilot plant with safety and process control considerations.
• Review P&ID and communicate design intent across disciplines and vendors.
• Develop and maintain manufacturing processes and control strategies for drug substance APIs.

Skills

Process engineering

Heat and mass transfer modelling

Project management

Leadership

Communication

Cross-functional collaboration

Safety and regulatory knowledge

Education

PhD in Chemical Engineering or related

BS/MS in Chemical Engineering or related with 10+ years

Tools

DynoChem

Aspen

DeltaV

Job description

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life‑changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We’re looking for people who are determined to make life better for people around the world.

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life‑changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We're looking for people who are determined to make life better for people around the world.

Lilly recently announced a $4.5 billion investment to create the Lilly Medicine Foundry, a new center for advanced manufacturing and drug development. The first‑ever facility of its kind, combining research and manufacturing in a single location, the Medicine Foundry will allow Lilly to further develop innovative solutions to optimize manufacturing processes and increase capacity for clinical trial medicines, while also reducing costs and environmental impact.

The Lilly Medicine Foundry Process Engineering organization is responsible for the chemistry, formulation, analytical, and engineering efforts to support development and scale‑up of investigational small molecules to support clinical and toxicology studies through late‑stage clinical trials. The Advisor – Process Engineer will serve as a senior technical authority within this organization, providing expert‑level engineering guidance across the full lifecycle of process development, scale‑up, and manufacturing support for the Foundry's small molecule node. This is a unique opportunity to be part of the startup team for a greenfield manufacturing site and to shape the processes, equipment, and engineering culture that will enable a successful transition to GMP manufacturing operations.

Responsibilities Under the direction of the Process Engineering leadership, the Advisor – Process Engineer:

• Understands and complies with corporate, divisional, and departmental procedures, including good manufacturing practices, safety, and other applicable regulations, and participates in the establishment and maintenance of the Foundry's Quality systems.
• Serves as the technical authority for equipment design and scale‑up calculations across the Foundry's small molecule node, spanning both established and emerging modalities.
• Leading detailed engineering calculations, heat and mass transfer modeling, and equipment sizing to support the design of production suites for small molecule, peptide, oligonucleotide, and other new modality processes.
• Performing and directing rig‑fit assessments for incoming processes, using process simulation tools (e.g., DynoChem, Aspen) to validate that reactor geometries, mixing performance, heat transfer, and pressure ratings are appropriate for scale‑up to the kilo lab and pilot plant.
• Providing expert guidance on the selection and design of reactor systems for a diverse range of chemistries, including batch and semi‑batch reactions, continuous flow unit operations, hydrogenation (fixed‑bed, slurry, and high‑pressure systems), peptide synthesis reactors (SPPS), and oligonucleotide synthesis platforms.
• Driving scale‑up from laboratory and kilo lab to full pilot plant production, ensuring heat and mass transfer, mixing, and process safety considerations are rigorously evaluated and documented at each scale transition.
• Leading P&ID reviews for relevant design packages and communicating design intent and basis across engineering disciplines, vendors, and partner functions.
• Developing and maintaining manufacturing processes and control strategies for drug substance APIs, with particular emphasis on translating development‑scale chemistry into fit‑for‑purpose equipment specifications.
• Providing expert guidance on the preparation of manufacturing and controls sections of INDs, CTX filings, regulatory submissions, and annual updates.
• Authoring and ensuring timely completion of high‑quality technical reports, basis‑of‑design documents, and engineering specifications.
• Ensures records and technical notebooks are adequately maintained.
• Demonstrates the Lilly Leadership behaviors, as defined in the Lilly Performance Management system.
• Plans and manages short‑term and long‑term development activities within the Process Engineering function.
• Assigns work, coordinates efforts, evaluates progress, and reviews the activities of engineers and scientists assigned to the group.
• Develops and reviews plans and timetables for project work.
• Recommends resource allocation to accomplish projects according to plans, communicates progress, and proposes changes to project timetables, objectives, or direction.
• Takes a leadership role in ensuring departmental compliance with all applicable laws, regulations, guidelines, procedures, and practices governing drug research and development, including departmental and corporate standard operating procedures, good manufacturing practices, and safety procedures.
• Provides active engagement and communication with cross‑functional partners including HSE, Quality Assurance, Tech Services, Development, Operations, FUME/Q, Automation, Maintenance, and Manufacturing.
• Ensures that people and their environment are safe and that company policies concerning safety are followed.
• Leads and participates in Process Hazard Reviews, HAZOPs, thermal hazard assessments, and other safety evaluations applicable to high‑pressure, flammable, and novel modality processes.
• Trains and mentors process engineers at all levels on equipment design principles, scale‑up methodologies, GMP procedures, and Foundry‑specific technical requirements across modalities.

Basic Qualifications

• PhD in Chemical Engineering, Chemistry, Pharmaceutical Sciences, or a related discipline.
• OR B.S. or M.S. in Chemical Engineering or a related discipline with 10+ years of experience in pharmaceutical, biotech, or CMO process engineering supporting drug substance API development or manufacturing.

Additional Skills and Preferences

• Deep technical expertise in chemical engineering fundamentals and pharmaceutical process development, including reaction chemistry, crystallization, extraction, distillation, and other unit operations relevant to small molecule API manufacturing.
• Strong knowledge of and experience in project management in a cross‑functional pharmaceutical development environment.
• Demonstrated leadership capabilities, especially in team environments with diverse scientific and engineering disciplines.
• Good interpersonal skills and demonstrated collaborative abilities with internal and external partners.
• Demonstrated success in persuasion, influence, and negotiation with stakeholders at all levels of the organization.
• Excellent verbal and written communication skills, with the ability to convey complex technical information to diverse audiences including operations staff, management, and regulatory agencies.
• Breadth of previous SMDD or equivalent pharmaceutical R&D and manufacturing experience preferred.
• Preferred experience with cGMP manufacturing and process support in a pilot plant or clinical manufacturing environment.
• Ability to prioritize multiple activities simultaneously and manage ambiguity in a fast‑paced startup environment.
• Ability to influence others and promote a positive, high‑performance work environment.
• Demonstrated initiative and risk‑taking in tackling novel technical challenges.
• Demonstrated technical proficiency and ability to translate technical and scientific information into actionable plans, resource strategies, and project budgets.
• Experience with process simulation tools (e.g., DynoChem, Aspen) and process control systems (e.g., DeltaV) preferred.

Other Information

Initial location at Parkwood West, Indianapolis, IN.

Permanent location at the Lilly Medicine Foundry, Lebanon, Indiana.

Limited domestic and international travel (< 10%) may be required.

Role requires the ability to work in 24‑hour manufacturing and laboratory environments.

Role is classified at the R5 (Advisor) level within Lilly's Engineering job family.

Lilly is an EEO/Affirmative Action Employer and does not discriminate on the basis of age, race, color, religion, gender, sexual orientation, gender identity, gender expression, national origin, protected veteran status, disability, or any other legally protected status.

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions.

If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.

Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees.

Our current groups include:

• Africa
• Middle East
• Central Asia Network
• Black Employees at Lilly
• Chinese Culture Network
• Japanese International Leadership Network (JILN)
• Lilly India Network
• Organization of Latinx at Lilly (OLA)
• PRIDE (LGBTQ+ Allies)
• Veterans Leadership Network (VLN)
• Women’s Initiative for Leading at Lilly (WILL)
• enAble (for people with disabilities)

Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is $129,000 - $189,200 Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well‑being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).

Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

#WeAreLilly At Lilly we strive to ensure our employees are part of a team that cares about them and our shared purpose of making life better for those around the world. How do we do this? We continue to look for ways to include, innovate, accelerate and deliver while maintaining integrity, excellence and respect for people. We hope that you seek to join us on our journey as we create medicine and deliver improved outcomes for patients across the globe! #WeAreLilly