Software Engineer

CamWebDir; Cambridge; Remote; GBP 35,000 - 42,000; Full time

Job summary

EMBL-EBI in Cambridge is seeking a Software Engineer with a strong record in software development to contribute to the UniProt data resource. You will design, develop, test and maintain software for the import production pipeline and collaborate with the Ensembl team on data imports.

You will also assist with data analysis and processing algorithms, support the production environment, and promote best coding practices.

Qualifications

• Degree in Computer Science or related discipline.
• Software Engineer with at least 3 years of professional experience in software development in a production environment.
• Experience in Agile processes.
• Good communication skills.
• Experience in Java and/or Python development.
• Experience in Git and basic Unix Commands.

Responsibilities

• Design, development, test, document and maintenance of software for the import production pipeline. Liaise with the Ensembl team in Reference selection and data imports.
• Assist with the data analysis and data processing algorithms.
• Support and maintain the resource production and service release.
• Engage and coordinate work with different teams in the organization.
• Assist with innovative programming and big data technologies.
• Assist with programming standards to promote best practices.

Skills

Java

Python

Agile

Git

Unix commands

Spark

Education

Degree in Computer Science or related discipline

Tools

Apache Spark

Job description

# Software EngineerEEuropean Bioinformatics InstituteCambridgeFull timevia WorkdayPosted 12 Oct 2026Apply on ebi.ac.uk →About the team We are looking for a Software engineer with a strong record in software development and interested in the production of one of the most internationally used data resources in biological science, UniProt. Our team is very dynamic and interdisciplinary comprising talented and enthusiastic software engineers and bioinformaticians working closely together with biologists and scientists.The UniProt resource is one of the most internationally used protein databases serving a large and diverse research community in genomics, proteins and proteomics.Your role You will be responsible for desgining and developing robust software modules and scalable workflows for efficient data release and management of the ever-growing volume of scientific information. Scalability will be an important feature of your clear, concise, well tested and documented code. You will also be interested in applying analytic engines and technical approaches to distributed processing of big data. The ability to work towards tight deadlines is essential. You will be working in collaboration with the Ensembl team in data imports between these resources.Duties and responsibilities• Design, development, test, document and maintenance of software for the import production pipeline. Liaise with the Ensembl team in Reference selection and data imports• Assist with the data analysis and data processing algorithms• Support and maintain the resource production and service release• Engage and coordinate work with different teams in the organization• Assist with innovative programming and big data technologies• Assist with programming standards to promote best practicesYou have• A degree in Computer Science or related discipline• Software Engineer with at least 3 years of professional experience in software development in a production environment• Experience in Agile processes• Good communication skills• Experience in Java and/or Python development• Experience in git and basic Unix CommandsYou may also have• You may also have experience with large data processing technologies (Apache Spark)Contract length: 3 years grant based contractSalary: Grade 5 Monthly salary starting at £3,452 after tax, plus generous benefits and financial allowances based on individual circumstances. Excluding 12.99% personal pension and insurance contributions.Why join usDo something meaningful At EMBL-EBI you can apply your talent and passion to accelerate science and tackle some of humankind's greatest challenges. EMBL-EBI, part of the European Molecular Biology Laboratory, is a worldwide leader in the storage, analysis and dissemination of large biological datasets. We provide the global research community with access to publicly available databases and tools which are crucial for the advancement of healthcare, food security, and biodiversity.Join a culture of innovation We are located on the Wellcome Genome Campus, alongside other prominent research and biotech organisations, and surrounded by beautiful Cambridgeshire countryside. This is a highly collaborative and inclusive community where our employees enjoy a relaxed atmosphere. We are committed to ensuring our employees feel valued, supported and empowered to reach their professional potential. Watch this video to see how EMBL-EBI makes an impact.Enjoy lots of benefits:• Financial incentives: Monthly family, child and non-resident allowances, annual salary review, pension scheme, death benefit, long-term care, accident-at-work and unemployment insurances• Flexible working arrangements - including hybrid working patterns• Private medical insurance for you and your immediate family (including all prescriptions and generous dental & optical cover)• Generous time off: 30 days annual leave per year, in addition public holidays• Relocation package including installation grant (if required)• Campus life: Free shuttle bus to and from work, on-site library, subsidised on-site gym and cafeteria, casual dress code, extensive sports and social club activities (on campus and remotely)• Family benefits: On-site nursery, 10 days of child sick leave, generous parental leave, holiday clubs on campus and monthly family and child allowances• Benefits for non-UK residents: Visa exemption, education grant for private schooling, financial support to travel back to your home country every second year and a monthly non-resident allowance.For detailed information please visit our employee benefits page here.What else you need to know• International applicants: We recruit internationally and successful candidates are offered visa exemptions. Please take a look at our International Applicants page for further information.• EMBL is a signatory of DORA. Find out how we apply DORA principles to our recruitment and performance assessment processes here.• Diversity and inclusion: At EMBL, we believe that diverse teams drive innovation and scientific excellence. We encourage applications from candidates of all genders, identities, nationalities and/or any other diverse backgrounds.• How to apply: To apply please submit a cover letter and a CV through our online system. Applications will close at 23:59 CET on the date shown below. We aim to provide a response within two weeks after the closing date.Closing Date 01/11/2026