PhD Studentship: Can a picture predict strength? Learning how collagen architecture sets the mechanics of living tissue.

University of Plymouth; Devon and Torbay; Presencial; GBP 18.000 - 21.000; Tempo integral

Benefícios oferecidos por esta vaga

4-year studentship

Tuition fees covered

UKRI stipend

Resumo da vaga

University of Plymouth seeks a motivated doctoral candidate to investigate collagen architecture in cornea and sclera using polarisation-resolved multiphoton microscopy. The project spans Exeter and Plymouth, with two tissue architectures and associated mechanics to model.

You will work within biophotonics and eye-vision groups, applying physics, engineering and biology, with no requirement for prior machine-learning experience, and there is a 4-year funded studentship with tuition fees and UKRI

Qualificações

• Backgrounds in physics, engineering, mathematics, biology or biomedical science all fit.
• You need mathematical confidence and willingness to code, but no machine learning.

Responsabilidades

• Image collagen architecture using label-free, polarisation-resolved multiphoton microscopy.
• Generate paired datasets linking tissue architecture to mechanical response.
• Develop machine-learning models that respect physics and report uncertainty.

Conhecimentos

Mathematical confidence

Willingness to code

Interdisciplinary background

Formação

Background in physics or engineering or mathematics or biology or biomedical science

Descrição da vaga

Supervisory team

Lead supervisors: Dr Daniela Oehring (University of Plymouth) and Dr Ben Sherlock (University of Exeter)

Other supervisors: Dr Ben Gardner (University of Exeter) and Dr Matt Jones (University of Plymouth)

Collaborators: Dr Craig Boote (Cardiff University) and Professor Ahmed Elsheikh (University of Liverpool)

Registered institution: University of Plymouth

Host Institutions: University of Exeter/University of Plymouth

Project description

Collagen makes connective tissue strong, and the direction its fibres run makes it stiff one way and compliant another, like grain in wood. What is unknown is whether an image of that structure predicts mechanical behaviour better than the two or three numbers we boil it down to: a mean fibre direction and how neatly the fibres line up. If the image wins, every model of soft tissue in use is leaving information behind. If not, a long-running argument closes. Either way it matters beyond the eye: such models borrow their material properties from other specimens. You will answer that in two tissues from the same eye. Cornea and sclera are continuous and built from the same collagen, arranged very differently: cornea in ordered lamellae of uniform fibrils, sclera interwoven and variable. Any difference in predictive performance comes from the arrangement. So there is a prediction you can be wrong about: the summary numbers should work on the ordered tissue and fail on the disordered one. At Exeter you will image collagen architecture in viable and freshly excised tissue by label‑free, polarisation‑resolved multiphoton microscopy.

At Plymouth, you will measure how the same specimens carry load. Generating that paired dataset, two architectures within one eye, is the project's first half. You will then learn the map from architecture to mechanics twice over: classically, fitting an established model to fibre orientation and dispersion, and with a neural network reading the whole image, constrained so thermodynamics holds by construction. Comparison on unseen specimens answers it. The last question is the most interesting. Living tissue rebuilds itself in response to load. Does tissue held under sustained load drift from what its architecture predicts? If so, mechanics depend on biological history in a way no current model captures.

You will finish able to image tissue microstructure, measure its mechanics, and build machine‑learning models that respect physics and report uncertainty. Few people can do all three. Backgrounds in physics, engineering, mathematics, biology or biomedical science all fit; you need mathematical confidence and willingness to code, but no machine learning. You will belong to two groups, a biophotonics laboratory at Exeter and an eye and vision group at Plymouth, time split equally and worked in blocks, with no weekly commuting, alongside a doctoral cohort across the South West. Cardiff contributes an X‑ray scattering archive of corneal and scleral collagen.

Deadline date: Midday (GMT), Wednesday 2 December 2026.

The studentship is supported for 4 years and includes full Home and International tuition fees plus a UKRI stipend (2027-28 rate).