Project Researcher in genomics of endangered plant species

University of Oulu; Oulu; Remote; EUR 41.000 - 45.000; Vollzeit

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Zusammenfassung

The University of Oulu invites applications for a Project Researcher in genomics of endangered plants within the PLEDGE project, fixed-term until 31.12.2028. You will contribute to ex situ conservation through genomic approaches, focusing on genetic diversity and robust seed bank strategies.

You will work in the Wildlife Genomics group, collaborating across Finland, Iceland and Ireland, with access to modern labs and HPC resources, and opportunities to publish in international journals.

Qualifikationen

• Doctoral degree in a relevant field.
• Experience in molecular laboratory methods.
• Proven experience with genetic or genomic data analysis.
• Experience with bioinformatic analysis of genomic datasets.
• Ability to work independently and in an international team.
• Excellent written and spoken English.
• Experience with next-generation sequencing data is an advantage.
• Experience with R, Python or Linux-based workflows is an advantage.
• Plant genetics or plant conservation biology experience is an advantage.
• Scientific publication record relevant to the position.

Aufgaben

• DNA extraction and genotyping/sequencing of threatened plant species.
• Development and optimisation of molecular protocols.
• Bioinformatic processing and analysis of genetic and genomic data.
• Assessment of population genetic diversity and population structure.
• Preparation of scientific publications, reports and project deliverables.
• Collaboration with project partners in Finland, Iceland and Ireland.

Kenntnisse

Molecular lab methods

Genomic data analysis

Bioinformatics workflow

English proficiency

Ausbildung

Doctoral degree in Genetics, Genomics, Molecular Biology, Evolutionary Biology, Conservation Biology, Bioinformatics or related field

Tools

R

Python

Linux

Jobbeschreibung

The University of Oulu is a multidisciplinary, international research university, with about 4000 employees who produce new knowledge based on high-standards research and provide research based education to build a more sustainable, smarter, and more humane world. The University of Oulu community has about 19,000 people in total. Our northern scientific community operates globally and creates conditions for the emergence of innovations. The University of Oulu is ranked in the top 3% of the world’s universities. All our research, education, and community activities are guided by our university’s values and ethical principles.

We are now looking for a

Project Researcher

in genomics of endangered plant species in the PLEDGE project to join us in Biodiversity Unit (Botanical Gardens) for a fixed-term position lasting until 31.12.2028.

University of Oulu is one of the largest universities in Finland, with a broad academic base. The Botanical Garden is part of the Biodiversity Unit and works in close collaboration with the Ecology and Genetics Research Unit. The Botanical Garden operates a dedicated micropropagation laboratory and cryopreservation facility and has extensive expertise in the ex situ conservation of threatened plant species. To date, more than 80 endangered native plant taxa have been successfully propagated, and the cryopreservation facility currently stores 34 plant species and 50 accessions of threatened plants. The Ecology and Genetics Research Unit has strong expertise and infrastructure in conservation and biodiversity genomics.

About the job

PLEDGE (Plants on the Edge) is an EU Interreg NPA project that addresses climate-driven biodiversity loss through the development of transnational ex situ conservation solutions for threatened plant species. The project brings together botanical gardens, conservation agencies and universities from Ireland, Iceland and Finland to develop seed banking, cryopreservation, micropropagation and conservation genomics approaches for safeguarding vulnerable plant populations.

As a Project Researcher in the project PLEDGE, you will use genomic approaches to support the ex-situ conservation of threatened plant species. Your work will focus on assessing genetic diversity within and among populations, identifying genetically important populations, and developing evidence-based collection strategies that maximise the genetic diversity preserved in seed banks, cryopreservation facilities and other ex situ collections. The project aims to build resilience against climate-driven biodiversity loss by developing transnational ex situ conservation solutions for threatened plant species across Finland, Iceland and Ireland.

Your responsibilities will include:

• DNA extraction and genotyping/sequencing of threatened plant species;
• Development and optimisation of molecular protocols;
• Bioinformatic processing and analysis of genetic and genomic data;
• Assessment of population genetic diversity and population structure;
• Preparation of scientific publications, reports and project deliverables;
• Collaboration with project partners in Finland, Iceland and Ireland.

The project may employ population genomic approaches such as SNP genotyping, reduced-representation sequencing, target capture, or whole-genome sequencing, depending on the study species and conservation objective

You will be a member of the Wildlife Genomics research group within the Ecology and Genetics Research Unit. The group conducts research in conservation genomics, environmental DNA, ancient DNA, biodiversity monitoring and evolutionary genetics, providing a stimulating research environment and opportunities for collaboration with researchers working on a wide range of organisms and conservation challenges.

What we offer

• The support of an experienced and enthusiastic multidisciplinary research team.
• Access to modern molecular biology laboratories, DNA sequencing facilities, bioinformatics infrastructure, and high-performance computing resources through the Ecology and Genetics Research Unit and the University of Oulu research infrastructures.
• Opportunities to publish scientific results in international peer-reviewed journals and to contribute directly to evidence-based conservation of threatened plant species under climate change.
• An excellent opportunity to build international collaborations with botanical gardens, conservation organisations and universities in Finland, Iceland and Ireland.
• Wellness benefit ePassi covering sport, culture, and well-being, and flexible multi-location and remote work opportunities. Read more about other staff benefits.
• OurBuddy Programme andSpouse Network support you and your close ones in settling into Oulu.
• Work-life balance: we don't count Saturdays as holiday periods!
• Development and career options of the big organisation.
• Work that matters! Read more about working with us.
• Finland is one of the most livable countries in the world, with a high quality of life, safety, excellent education system, and competitive economy. Read more about living in Oulu!

Who are you?

In order to succeed and enjoy the position, we require from you:

• Doctoral degree in Genetics, Genomics, Molecular Biology, Evolutionary Biology, Conservation Biology, Bioinformatics or a closely related field
• Experience in molecular laboratory methods
• Demonstrated experience with genetic or genomic data analysis
• Experience in bioinformatic analysis of genetic or genomic datasets
• Ability to work independently and as part of an international team
• Excellent written and spoken English

The following will be considered an advantage:

• Experience with next-generation sequencing data
• Experience with R, Python or Linux-based bioinformatic workflows
• Experience with plant genetics or plant conservation biology
• Scientific publication record relevant to the position

The position is fixed term starting from 1.1.2027 (or as agreed) until 31.12.2028.

The salary will be based on the level 9 of the demand level chart for other expert and support staff of Finnish universities. In addition, a salary component based on personal work performance will be paid (maximum of 50 % of the job-specific component). Starting gross salary will be approx. 3700-4000EUR per month (before taxes). A trial period of 6 months is applied to the position.

We welcome applicants from all backgrounds, such as people of different ages, genders, and linguistic, cultural, or minority groups.

Contact Information

If you have any further questions, please contact Professor Jouni Aspi (jouni.aspi(at)oulu.fi).